Remember though, God does not confine himself to human expectations and/or parameters of belief.
Indeed, a key point in any attempt at understanding this. I see three ways to approach it, courtesy of Michael Shermer:
1. The conflicting worlds model: science and religion are mutually exclusive ways of knowing things, only one of them can be right. This is the position of extremists on both sides.
2. The same world model: science and religion are complementary ways of knowing about things, and as both progress to a deeper understanding each will find that the other is true at the core. The late Pope John Paul II and the Dalai Lama are in this camp, if I've read them right.
3. The separate worlds model: Science and religion deal with different things, there's no intrinsic conflict, they are what the evolutionary biologist Stephen Jay Gould called "non-overlapping magisteria." Science has taken over the job of explaining the natural world, which renders a lot of religious stories obsolete, at least in any literal sense, but religion retains its original purposes as an institution for social cohesion and a guide to finding personal meaning and spirituality.
The first two I don't think work at all as a resolution, though I confess (hear my confession, Father ;-) ) that I've taken the first position on more than one occasion, and usually regretted it later. It just creates animosity and closes minds, including mine and that's not what I want to be like. I'm not very happy with the third one either, it seems too much like an attempt to have it both ways and explain away conflicts with word games. It's the most logically satisfying to me, but I still have a lot of issues with it, mostly because I have such difficulty with the implicit premise that there *is* a god. Most days I flip-flop between the first and third positions, depending on, I dunno, the phase of the moon or my biorhythms or something. Anybody know a fourth one? Unlike most atheists, however, or theists for that matter, I've actually read the Bible carefully several times, and some things stick in my mind, like this from Isaiah:
55:8 For my thoughts are not your thoughts, neither are your ways my ways, saith the LORD.
55:9 For as the heavens are higher than the earth, so are my ways higher than your ways, and my thoughts than your thoughts.
In other words, yep, things are mysterious; deal with them. So I try, with widely varying degrees of success.